Wyszukaj homolog podanej sekwencji we wszystkich wymienionych poniżej genomach oraz w genomie Erwinia amylovora
Wykonaj ich porownanie oraz wygeneruj drzewa dystansu (NJ), MP i ML uzywajac sekwencji z E.amylovora ATCC 49946 ( FN666575.1) jako grupe zewnetrzna
Wyslij porownanie (sekwencje w pliku tekstowym porownane I zapisane w formacie fasta) na email malgorzata.waleron@gmail.com
*Pectobacterium*
Pectobacterium wasabiae WPP163
(CP001790<http://www.ncbi.nlm.nih.gov/nuccore/CP001790.1)
Pectobacterium wasabiae CFBP 3304 (AKVS00000000)
Pectobacterium atrosepticum SCRI 1043
(BX950851<http://www.ncbi.nlm.nih.gov/nuccore/BX950851.1)
Pectobacterium atrosepticum CFBP 6276 (ASAB00000000)
Pectobacterium sp. SCC3193 (CP003415)
Pectobacterium carotovorum subsp. carotovorum PC1
(CP001657<http://www.ncbi.nlm.nih.gov/nuccore/CP001657.1)
Pectobacterium carotovorum subsp. carotovorum PCC21
(CP003776<http://www.ncbi.nlm.nih.gov/nuccore/CP003776.1)
Pectobacterium carotovorum subsp. carotovorum WPP14 (ABVY00000000)
Pectobacterium carotovorum subsp. brasilensis PBR 1692 (ABVX00000000)
*Bakteriofagi Pectobacterium*
Pectobacterium phage phiTE (JQ015307)
Pectobacterium phage PP1 (JQ837901)
Pectobacterium phage ZF40 (JQ177065)
Pectobacterium phage My1 (JX195166.1)
*Dickeya*
Dickeya dianthicola GBBC 2039
(CM001838<http://www.ncbi.nlm.nih.gov/nuccore/CM001838.1>
)
Dickeya zeae Ech 1591 (CP001655<http://www.ncbi.nlm.nih.gov/nuccore/CP001655.1>
)
Dickeya zeae CSL RW192 (AONY00000000)
Dickeya zeae MK19 (AOOR00000000)
Dickeya zeae NCPPB 2538 (AOOF00000000)
Dickeya zeae NCPPB 3531 (AOOI00000000)
Dickeya zeae NCPPB 3532 (AONW00000000)
Dickeya zeae ZJU1202 (AJVN00000000)
Dickeya zeae DZ2Q (APMV00000000)
Dickeya zeae MS1 (APWM00000000)
Dickeya dadantii 3937 (CP002038<http://www.ncbi.nlm.nih.gov/nuccore/CP002038.1>
)
Dickeya dadantii Ech586
(CP001836<http://www.ncbi.nlm.nih.gov/nuccore/CP001836.1>
)
Dickeya dadantii Ech703
(CP001654<http://www.ncbi.nlm.nih.gov/nuccore/CP001654.1>
)
Dickeya dadantii NCPPB 3537 (AOOL00000000)
Dickeya dadantii NCPPB 898 (AOOE00000000)
Dickeya dadantii subsp. dieffenbachiae NCPPB 2976 (AOOG00000000)
Dickeya sp. DW 0440 (AOON00000000)
Dickeya sp. CSL RW240 (AONZ00000000)
Dickeya sp. MK7 (AOOO00000000)
Dickeya sp. NCPPB3274 (AOOH00000000)
Dickeya sp. NCPPB 569 (AOOD00000000)
Dickeya solani GBBC 2040
(CM001860<http://www.ncbi.nlm.nih.gov/nuccore/CM001860.1>
)
Dickeya solani IPO 2222
(CM001859<http://www.ncbi.nlm.nih.gov/nuccore/CM001859.1>
)
Dickeya solani MK10 (CM001839<http://www.ncbi.nlm.nih.gov/nuccore/CM001839.1>
)
Dickeya solani MK16 (CM001842<http://www.ncbi.nlm.nih.gov/nuccore/CM001842.1>
)
Dickeya dianthicola IPO980
(CM002023<http://www.ncbi.nlm.nih.gov/nuccore/CM002023.1>
)
Dickeya dianthicola NCPPB 3534
(CM001840<http://www.ncbi.nlm.nih.gov/nuccore/CM001840.1>
)
Dickeya dianthicola NCPPB 453
(CM001841<http://www.ncbi.nlm.nih.gov/nuccore/CM001841.1>
)
Dickeya chrysanthemi NCPPB 3533 (AOOJ00000000)
Dickeya chrysanthemi NCPPB 402 (AOOA00000000)
Dickeya chrysanthemi NCPPB 516 (AOOC00000000)
Dickeya paradisiaca NCPPB 2511 (AONV00000000)