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Galaxy

Analyzc Data

Wortcflow SharedData-r visuafaation - Help- User

Tools

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Pi-^ł rriiiiiwi

9.

NGS: Vari<int Analysis

with

functional information using ANNOVAR

/F FreeBayes - bayesian oenetic yariant detector (Galaxy Tool Version 0.4.1)

Load reference genome from

Local cache

*V Versions - Options

C

SnoEff Variant effect and annotation

SnpCff Ayailabtę Dątąbasęs

Sncfcff Downtead Download a new database

Mutątę Codons w*h SNPS

Yariant Annttator process variant counts

FreeBayes - bayesian genetk yariant detector

Nałyg yariant Caller • tabulate yariable sites (rom BAM datasets

BamLefŁASor. indels in SAM datasets

Ptiyłorelatlyes Relatedness of minor alelle seguences in NJ tree

MAF boxplot Minor Allele Freguency Boxplot

Samplo BAM (ile 1: Sample BAM file BAM file

-region options Limit analysis to target

' □ 1 £ D^T^enyćl_GRCh37_OrderedGenes_sorted.bećl | -t -targets

Choose parameter selection level

l:Simple diploid calling

Sclcrt how much control over the freebayes run you necd