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17. LITERATURA UZUPELNIAJACA

WSTEP

Dawkins R. The selfish gene. Oxford University Press. Oxford, New York. 1976

Dennett D.C. Darwin est -il dangereux? Editions Odile Jacob. Paris, 2000

1. EWOLUCJA PREBIOTYCZNA

Bartel, D.P.and Szostak, J.W. (1993) Isolation of new rybozymes from a large pool of random sequences. Science 261, 1411 - 1418

de Souza S.J. et al. (1996) Introns and gene evolution.Genes Cells 1,493-505

Doolittle, W.F. and Brpwn, J.R. (1994) Tempo, mode, the progenote, and the universal root. . Proc Natl Acad Sci U S A 91, 6721-6728

Doudna, J.A. et al. A multisubunit ribozyme that is a catalyst of an template for complementary strand RNA synthesis. Science, 251, 1605 - 1608 (1991)

Ekland, E.H. and Bartel, D. (1995) The secondary structure and sequence optimization of an RNA ligase ribozyme. Nucleic Acids Res 23, 3231 - 3238

Ferrs, J.P. and Ertem, G. (1993) Montmorillonite catalysis of RNA oligomer formation in aqueous solution. A model for the prebiotic formation of RNA. J. Am Chem. Soc. 115, 12270-12275

Gordon, K.H.J. (1995) Were RNA replication and translation directly coupled in the RNA (+ protein ?) world ? J. theor. Biol. 173, 179-193

Lohse PA, Szostak JW. (1996) Ribozyme-catalysed amino-acid transfer reactions. Nature. 381, 442-4.

Orgel, L.E., (1998) The origin of life - a review of facts and speculations. TIBS 23, 491-495

Robertson, M.P., Ellington, A.D., (1998) How to make a nucleotide. Nature 395, 223 - 225

2. USZKODZENIA DNA I ICH NAPRAWA

Taddei, F. et al. (1997) Role of mutator alleles in adaptive evolution. Nature 387, 700-702

Doetsch, M.P., (1995) What' old is new, an alternative DNA excission repair pathway. TIBS 20, 384 - 386

Henle ES, Linn S. (1997) Formation, prevention, and repair of DNA damage by iron/hydrogen peroxide. J Biol Chem. 272, 19095-8

Kolodner RD. (1995) Mismatch repair: mechanisms and relationship to cancer susceptibility. Trends Biochem Sci. 20, 397-401

Olinski, R. Jurgowiak M., (1999) Oksydacyjne uszkodzenia DNA (8 oksoG) biomarkerem niektorych chorpb czlowieka. Kosmos 48, 329 - 338

Pietrzykowska, I., Krwawicz, J. (1999) Mechanizmy naprawy DNA u bakterii i czlowieka. Kosmos 48, 315 - 328

Polaczek, B. (1999) Reperacja zla sparowanych zasad w DNA - ewolucja systemu od bakterii do czlowieka. Kosmos 48, 353 - 358

Sedgwick B, Lindahl T. (2002) Recent progress on the Ada response for inducible repair of DNA alkylation damage. Oncogene. 21, 8886-94

Tudek, B., Mechanizmy naprawy utlenionych zasad. (1999) Kosmos 48, 339 - 352

Walker GC. (1995) SOS-regulated proteins in translesion DNA synthesis and mutagenesis. Trends Biochem Sci. 20, 416-20

3. DRZEWA FILOGENETYCZNE

Li, W-H. Molecular Evolution. Sinauer Associates, Inc., Publishers. Sunderland Massachussetts, 01375, USA, 1997

Page R.D.M. and Holmes E.C. Molecular evolution : a phylogenetic approach. Blackwell Science. 1998

Zuckerkandl, E. and Pauling, L. (1965) Evolutionary divergence and convergence in proteins. W: Bryson V. i Vogel, H.J. (eds) Evolving Genes and Proteins. Academic Press London, New York pp. 97-106

4. METODY KONSTRUKCJI DRZEW FILOGENETYCZNYCH

Li, W-H. Molecular Evolution. Sinauer Associates, Inc., Publishers. Sunderland Massachussetts, 01375, USA1997

5. CHARAKTERYSTYKA SEKWENCJI DNA W CHROMOSOMIE

Bernardi G, et al. (1985) The mosaic genome of Warm-blooded vertebrates. Science, 228 : 953-958.

Cross, S. and Bird, A.P. (1995) CpG islands and genes. Current Opinion in Genet. Develop. 5, 309-314

Filipski, J. et al. (1973) An analysis of bovine genome by Cs2SO4-Ag+ density gradient centrifugation J. Mol. Biol. 80, 177-197

Hyrien O, et al. (1987) A hotspot for novel amplification joints in a mosaic of Alu-like repeats and palindromic A+T-rich DNA. EMBO J, , 6 , 2401-2408

Ira, G. (1997) Wyspy CpG - jedyne niezmetylowane odcinki DNA charakterystyczne dla genomów kr®gowców. Post. Bioch. 43, 189-198

Jelinek WR, Schmid CW. (1982) Repetitive sequences in eukaryotic DNA and their expression. Ann Rev Biochem, , 51 , 813-844

Jurka, J. and Smith, t. (1988) A fundamental division in the Alu family of repeated sequences. Proc Natl Acad Sci U S A, 85, 4775-4778

Levinson G., Gutman, G.A. (1987) Slipped strand mispairing : A major mechanism for DNA sequence evolution. Biol. Mol. Evol. 4, 203-221

Skowronski, J. and Singer, M.F. (1985) Expression of a cytoplasmic LINE-1 transcript is regulated in a human teratocarcinoma cell line. Proc Natl Acad Sci U S A, 82, 6050-4

6. ANALIZA FILOGENETYCZNA POPULACJI LUDZKICH

Foster, E.A et al. (1998) Jefferson fathered slave's last child. Nature 396, 27-28

Gilbert, W. (1986) The RNA world. Nature 319, 618

Harding, R., et al. (1997) Archaic african and asian lineages in the genetic ancestry of modern humans. Am. J. Hum. Genet. 60, 772-789

Jeffreys AJ, et al. (1985) Hypervariable minisatellite regions in human DNA. Nature, , 314 : 67-73

Jobling MA. (2001) In the name of the father: surnames and genetics. Trends Genet. 17, 353-7.

Jobling MA, Tyler-Smith C. (1995) Fathers and sons: the Y chromosome and human evolution. Trends Genet. 11, 449-56

Jobling, M.A.et al. (1998) Hypervariable digital DNA codes for human paternal lineages : MVR-PCR at the Y-specific minisatellite, MSY1 (DYF155S1). Hum. Mol. Genet. 7, 643-653

Karafet, T.M. et al. (1999) Ancestral asian sources of New Word Y-chromosome founder haplotypes. Am. J. Hum. Genet. 64, 817-831

Semino O, et al. (2000) The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. Science. 290, 1155-9

Spurdle AB, Jenkins T. (1996) The origins of the Lemba "Black Jews" of southern Africa: evidence from p12F2 and other Y-chromosome markers. Am J Hum Genet. 59, 1126-33.

Templeton A.R. (2002) Out of Africa again and again. Nature 416, 45 - 51

Thomas, M.G. et al. (1998) Origin of Old Testament priests. Nature, 394, 138-139

7. STRUKTURA CHROMATYNY

Horn PJ, Peterson CL. (2002) Molecular biology. Chromatin higher order folding--wrapping up transcription. Science. 297, 1824-7.

Kamakaka RT. (2002) Chromatin: a connection between loops and barriers? Curr Biol. 12, R535-7.

Petes. T.W. (2001) Meiotic recombination hot spots and cold spots. Nature reviews. Genetics 2, 360 - 369

Richards EJ, Elgin SC. (2002) Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects. Cell. 108, 489-500.

Wanner G, Formanek H. (2000) A new chromosome model. J Struct Biol. 132, 147-61.

West AG,et al. (2002) Insulators: many functions, many mechanisms. Genes Dev. 16, 271-88.

8. ROLA CHROMATYNY W REGULACJI EKSPRESJI GENOW

Balciunas D, et al . (1999) The Med1 subunit of the yeast mediator complex is involved in both transcriptional activation and repression. Proc Natl Acad Sci U S A. 96, 376-81.

Elgin SC, Workman JL. (2002) Chromosome and expression mechanisms: a year dominated by histone modifications, transitory and remembered. Curr Opin Genet Dev. 12, 127-9

Luger K et al. (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature. 389, 251-60.

Nakayama J, et al. (2001) Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science. 292, 110-3.

Sutani T, Yanagida M. (1997) DNA renaturation activity of the SMC complex implicated in chromosome condensation. Nature. 388, 798-801.

Turner BM. (2002) Cellular memory and the histone code. Cell. 111, 285-91

Xue Y et al. (1998) NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities. Mol Cell. 2, 851-61.

9. ROLA WYSP CpG W DZIEDZICZENIU EPIGENETYCZNYM

Heard, E. (2006) Delving into the diversity of facultative heterochromatin: the epigenetics of the inactive X chromosome. Current Opinion in Genetics & Development, 15, 482-489

Fuks F. (2005) DNA methylation and histone modifications: teaming up to silence genes. Current Opinion in Genetics & Development, 15, 490-495

Baylin S.B. and Ohm. J.E. (2006) Epigenetic gene silencing in cancer - a mechanism for early oncogenic pathway addiction? Nature Reviews Cancer 6, 107-116

Ushijima T. (2005) Detection and interpretation of altered methylation patterns in cancer cells Nature Reviews Cancer 5, 223-231

Delgado, S., Gomez, M., Bird, A. and Antequera, F. (1998) Initiation of DNA replication at CpG islands in mammalian chromosomes. The EMBO J. 17, 2426-2435

Esteller, M. (2005) Dormant hypermethylated tumour suppressor genes: questions and answers, J. Pathology 205, 172-180

10. TELOMERY I CENTROMERY

Blackburn EH. (1994) Telomeres : no end in sight. Cell, 77, 621-623.

Cervantes RB, Lundblad V. (2002) Mechanisms of chromosome-end protection. Curr Opin Cell Biol. 14, 351-6

Cleveland, D. W., Mao Y. and Sullivan K. F. (2003) Centromeres and Kinetochores: From Epigenetics to Mitotic Checkpoint Signaling. Cell 112, 407-421

Huffman KE et al (2000) Telomere shortening is proportional to the size of the G-rich telomeric 3'-overhang. J Biol Chem. 275, 19719-22

Henikoff S, et al. (2001) The centromere paradox: stable inheritance with rapidly evolving DNA. Science. 293, 1098-102

Marcais, B. et al. (1991) Structural organization and polymorphism of the alpha satellite DNA sequences of chromosome 13 and 21 as revealed by pulse field gel electrophoresis. Hum. Genet. 86, 311-316

Sharp DJ . et al. (2000), Microtubule motors in mitosis. Nature. 407, 41-7.

Ugarkovic D, Plohl M. (2002) Variation in satellite DNA profiles--causes and effects. EMBO J. 21, 5955-9.

Vernos, I. and Karsenti, E. (1998) Microtubule dynamics, molecular motors and chromosome behavior. In "Dynamics of Cell Division", Endow S and D Glover (eds), Oxford University Press, New York

Yoda, K., Ando, S., Okuda, A., Kikushi, A and Okazaki, T. (1998) In vitro assembly of the CENP-B/alpha satellite DNA /core histone complex : CENP-B causes nucleosome positioning. Genes to Cells 3, 533-548

11. CYKL KOMORKOWY

Castro, A., Bernis, C., Vigneron S., Labbe, J-C. and Lorca, T. (2005) The anaphase-promoting complex: a key factor in the regulation of cell cycle Oncogene 24, 314-325

Meijer, L. (2003) Le cycle de division cellulaire et sa régulation. Onocologie 5, 311 - 326

12. SYSTEM OCHRONY INTEGRALNOSCI GENOMU U EUKARIOTOW.

Feldser, D., Hackett, J.A., Greider, C.W. (2003) Telomere dysfunction and the initiation of genome instability. Nature Reviews on Cancer, 3, 1 - 5

Zhou, B-B, S., Elledge, S.J. (2000) The DNA damage respons: putting checkpoints in perspective. 433 - 439

Shiloh, J. (2003) ATM and related protein kinases: safeguarding genome integrity. Nature Reviews Cancer 3, 155 - 168

Rajagopala, H, Lengauer, Ch. (2004) Aneuploidy and cancer. Nature, 433, 338 - 341

Nowak, M.A. et al. (2002) The role of chromosomal instability in tumor initiation. Proc. Natl. Acad. Sci USA. 99, 16226 - 16231

Gasser, S.M. Cobb, J.A., Shimada, K. (2004) Redundancy, insult-specific sensor and thresholds: unlocking the S-phase checkpoint respons. Current Opinion in Genetics & Development, 14, 292-300

Levine A.J. (1997) p53, the cellular Gatekeeper for growth and division. Cell 88, 323 - 331

13. ELEMENTY GENETYKI MOLEKULARNEJ CYKLU ROZWOJOWEGO

Carroll, S.B., et al. From DNA to diversity: molecular genetics and the evolution of animal design. Blackwell Science. 2001

French, V and Brakefield, P.M. (1995) Eyspot develipment on butterfly wings : the focal signal. Dev. Biol. 168, 112 - 123

14. GENETYKA ZACHOWANIA

Ding YC, et al. (2002) Evidence of positive selection acting at the human dopamine receptor D4 gene locus. Proc Natl Acad Sci U S A. 99, 309-14.

Ebisawa T et al. (2001) Association of structural polymorphisms in the human period3 gene with delayed sleep phase syndrome. EMBO Rep. 2, 342-6.

Lakatos K, et al. (2000) Dopamine D4 receptor (DRD4) gene polymorphism is associated with attachment disorganization in infants. Mol Psychiatry. 5, 633-7

Reppert SM, Weaver DR. (2002) Coordination of circadian timing in mammals. Nature. 418, 935-41.

Sokolowski, M.B. (2001) Drosophila : genetics meets behaviour. Nature reviews. Genetics. 2, 879 - 890

Tang YP,et al (1999) Genetic enhancement of learning and memory in mice. Nature. 401, 63-9

Toh KL, et al. (2001) An hPer2 phosphorylation site mutation in familial advanced sleep phase

syndrome. Science. 291, 1040-3

Tronche, F. et al. (1999) Disruption of the glucocorticoid receptor gene in the nervous system results

in reduced anxiety. Nature Genetics 23 (100 - 103)

Tsien JZ et al. (1996) Subregion- and cell type-restricted gene knockout in mouse brain. Cell. 87, 1317-26

Young MW. (2000) Life's 24-hour clock: molecular control of circadian rhythms in animal cells. Trends Biochem Sci. 25, 601-6

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