UZYWANE SKROTY
Kursywy uzywa sie dla oznaczenia genow, zarowno w pelnej formie jak i w skrocie, oraz dla oznaczenia lacinskich nazw jednostek taksonomicznych. W przypadku drozdzy, geny szczepu dzikiego pisze sie duzymi literami a geny zmutowane malymi literami. W skrotach genow zlozonych z liter i cyfr w zasadzie nie robi sie odstepu miedzy literami a cyframi. Homologiczne geny w roznych gatunkach niekiedy oznacza sie przez dodanie litery np. h (human); y, (yeast); m, (mouse); d, (drosofila)
Nomenklatura genow
Homo:
E. coli:
S. cerevisiae :
D. melanogaster:
E. coli |
S. cerevisiae |
Mus musculus |
|
mutS ( skrot od slowa mutator) |
MSH2 (skrot od mutS homologue), yMSH2 |
Msh2, mMsh2 |
gen szczepu dzikiego |
mutS Ż |
msh2 |
msh2, Msh2Ż |
gen zmutowany |
MutS |
Msh2 |
mMSH2 |
bialko |
A
abd-A abdominal-A
Abd-B Abdominal-B
ada adaptive response (gen kodujacy DNA-metylotransferaze
O6-metyloguaniny)
ADHD attention deficit/hyperactivity disorder
Alu sekwencja powtarzajaca sie w genomie naczelnych
Antp Antennapedia
A/P anterior/posterior (os przod-tyl zwierzecia)
AP AP nukleaza (apurynowo/apirymidynowa, glikozylaza liaza)
AS-C Achaete-Scute Complex (genow drosofili)
B
bcd bicoid
BER base excission repair
Brm brahma
BRG-1 brahma related gene
C
CAF1 Chromatin Assembly Factor
cad caudal
CARM1 co-activator associated arginine methyltransferase
Cbf1 centromere binding factor (bialko)
CBF3 centromere binding factor (kompleks bialkowy)
CBP/P300 CREB-binding protein
cc central core (element centromeru S. pombe)
Cdc13 cell division control protein
CDEI, II, III conserved DNA element I, II, III
CEN sekwencja centromerowa w S.cerevisiae
CENPA,B... centromeric protein A, B....
cep C. elegans P-53-like protein
CID centromere identifier
Cot iloczyn Co (stezenie) i t (czasu)
CP1 chromatin protein
CREB c-AMP responsive element binding protein
CRY cryptochrome
CSA,CSB Cocayne syndrom grupa komplementacji A,B
Cse4p chromosome segregation
CTD carboxy terminal domain
CTCF CCCCTC binding factor
CYC cycle
D
dbt doubletime
dClk drosophila clock
dfd deformed
DinB damage inducible
Dl delta
Dll distalless
DM double minute
Dnmt1 DNA methyltransferase
dpp decapentaplegic
DR direct repeat
DRD4 dopamine receptor
DSPS delayed sleep phase syndrom
D/V dorsal/ventral
E
EN endonuclease
en engrailed
env envelope
ERCC1 excission repair cross complementing gene 1
ES embryonic stem (komorki)
EST ever shorter telomeres
ey eyeless
eve even skipped
F
FACT facilitates chromatin transcription
FAD, FADH nukleotyd flawiniwo adeninowy forma utlenionai
zredukowana
FASPS familial advanced sleep phase syndrom
FEN1 5' - 3' flap exo/endonuclease
FLA free left Alu
for foraging
Fpg formamidopyrimidyne glycosylase
FRA free right Alu
G
G (prazki) Giemza
gag group specific antigene
GR, Grl glucocortycoide receptor
H
HAT histone acetyltransferase
hb hunchback
hBRM human brahma
HDAC histone deacetylase
8HDF 8-hydroksy-5-deazaryboflawina
HERV human endogeneous retrovirus
hh hedgehog
H3-K27 lizyna w pozycji 27 histonu H3
HMG high mobility group
HML homothallic mating left
HMR homothallic mating right
HMT histone methyltransferase
HO homothallic (nuclease)
Hox homeobox
HP1 heterochromatin protein 1
HS hypersensitive sites
HSR homogeneously staining region
HSV herpes simplex virus
I
IR inverted repeat
ISWI imitation switch
L
L1 long (repetitive sequence element)
LCR locus control region
LEU2 leucine (gen kodujacy dehydrogenaze -3-
izopropylomaleinianu)
lexA lambda excission
LINE Long interspersed repetitive element
LTR long termůinal repeat
loxP gorace miajsce ekombinacji faga P
LUCA last universal common ancestor
M
MAR matrix attachment region
MATa, γ
MBD2 methylCpG binding domain
MCAK mitosis-specific centromere associated kinase
MeCP2 methyl-CpG binding protein
MMR mismatch repair
MMTV mouse mammary tumor virus
MNNG N-metylo-N'nitro-N-nitrozoguanidyna
M/R/N MRE11-RAD50-NBS1, meiotic recombination
radiation sensitivity/Nijmgen breackage syndrom
MRP multidrug resistance protein
MSY1 minisatellite on the chromosome Y
MTH MutT homologue
MTHF metenylotetrahydrofolian
MutT, Y mutator
MVR-PCR minisatellite variant repeat polymerase chain reaction
MYH MutY homologue
N
N notch
NAP1 Nucleosome assembly proteine
neor neomysine resistant
NER Nucleotide excission repair
NES nuclear export sygnal
NF1 nuclear factor
NHEJ non-homologous end joining
NLS nuclear localisation sygnal
NMDA N-methyl-D-asparate
nos nanos
npr-1 neuropeptide receptor
NR neighbor relation (metoda)
NR1,2 NMDA receptor 1,2
NTG endonuclease of thymine glycol
NuRD nucleosome remodeling and histone deacetylase
O
OGG1,2 8-oxo-guanine DNA glycosylase
ORF open reading frame
OJT operacyjna jednostka taksonomiczna
P
Pb proboscipedia
PACAP pituary adenylate cyclase activating peptide
PcG polycomb group
PCR polymerase chain reaction
PCNA proliferating cell nuclear antigen
P/D proximo/distal
per period
PGK protein cGMP dependent kinase
pN piko Newton (jednostka sily)
pol polymerase
, , polymerase
Q
Q (prazki) Quinacrine
R
r rover (ang. wloczega)
R (prazki) reciproques
7R allel DRHD posiadajacy 7 VNTR
RAD radiation abnormal sensitivity
RAM random access memory
Rap represor-activator protein
RB retinoblastoma (gen supresora nowotworow)
REB1 rDNA enhancer binding protein
RecA recombination
RFLP restriction fragment length polymorphism
RNAPI, II.. RNA polymarase
RPA replication protein A
RSC remodel structure of the chromatin
RT reverse transcriptase
RTH Retino-hypothalamic tract
S
s sitter
SAR scaffold-associated region
SCN suprachiasmatic nuclei
Scr sex combs reduced
sd scalloped
SELEX systematic evolution of ligands by exponential enrichment
Sin SWI independent
SINE short interspersed element
Sir silent information regulator
SMC structural maintenance of the chromosome
snRNA small nuclear RNA
sog short gastrulation
SOS save our souls
SpCENPA S. pombe centromeric protein A
spi spitz
SRY sex determining region on the chromosome Y
ssDNA single stranded DNA
STAR subtelomeric antisilencing region
STIR subtelomeric interspersed repeats
sunY split gene unknown function why?
Su(hw) supressor of hairy wings
SWI/SNF switch/sucrose non fermenting
sna snail
T
TAD transcription activiation domain
TAF TBP-associated factor
TBP TATA-box binding protein
TBF1, 2.... TTAGGG repeat binding factor
td thymidine synthase
TFIIA, B, ... transcription factor
tim timeless
tk thymidine kinase
TLS translesion synthesis
TRCF transcription-repair coupling factor
TRF1, 2.... telomeric repeat-binding factor
TTDA trychtiodystrophy A
twi twist
U
Ubx ultrabithorax
UmuDC UV mutator
UPGMA unweighted pair group method with arythmetic mean
URA3 (gen kodujacy dekarboksylaze orotydyno-5'fosforanu)
UTR untranslated repeat
UvrA, B, ... ultraviolet resistant
V
vg vestigial
VNTR variable number tandem repeats
VP16 viral protein
W, X, Y, Z
wg wingless
XPA, B, ... xeroderma pigmentosum (grupy komplementacji)
YAP Y Alu polimorfizm
z zerknült
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